21. Microbial Ecology - Biological Sciences microbial ecology Biological Sciences. 1992. Oceanic bacterial productivity.Advances in microbial ecology, 12113181. New York Plenum. http://www.vims.edu/bio/microbial/

Home Research Biological Sciences Programs ... Microbial Ecology Quick Links and Search People search Web search Calendars / Events Library search Contact Us Directions to VIMS Site Index Prospective students Current students Alumni Job Openings - For VIMS Use - ITNS Help Request Web Email VIMS Forms VIMS Policies Scheduling Resources CORE Reports Research Sites, Data Images Collaborators Facilities ... People Microbial Ecology Biological Sciences The Microbial Ecology lab is a research unit of the Department of Biological Sciences Bacterioplankton are the smallest and most numerous autonomous organisms on the planet. Most cells are less than 0.5 microns in diameter, contain just a few femtograms (=10 grams) of carbon and have rather small genomes. Yet they are numerous, reaching densities of over 1 million cells per ml in the coastal and open sea, and even higher levels in estuaries. Bacterioplankton are the most widely distributed organisms on earth, flourishing near geothermal vents in the deep sea, in polar sea ice, and all areas in between these extremes. In many areas, bacterial biomass approaches or exceeds that of phytoplankton and zooplankton: they are an important component of marine foodwebs, and important agents of nutrient cycling and geochemical reactions. Our group studies the population dynamics and biogeochemical roles of bacterioplankton throughout the marine realm, from rivers and upland streams feeding Chesapeake Bay and the Bay itself, to the coastal oceans the open sea and the marginal ice zones on Antarctica. We measure bacterial biomass using video image analysis, and estimate bacterial productivity with a variety of approaches, including radioisotopic tracers of DNA or protein synthesis and cell division. Some of our past and current work is described in the references and websites given below. For more information, please see:

22. Cornell Enology Evaluations of grape cultivars, grape growing and vinification techniques on wine quality plus basic research in microbial ecology of wine fermentations by Thomas HenickKling http://www.nysaes.cornell.edu/fst/faculty/henick/

Enology NYS Wine Analysis Lab Cooperators Contact Info Events ... Links

23. Grice Marine Laboratory The Grice Marine Laboratory supports teaching and research in evolutionary biology, marine biogeography, developmental and molecular biology, benthic ecology, microbial ecology, phytoplankton ecology, environmental physiology, fish systematics, and invertebrate zoology. http://www.cofc.edu/~grice/grice.htm

Grice Marine Laboratory Update your link. Go to http://www.cofc.edu/~grice

24. ProbeBase library) without prior phylogenetic analysis. probeBase is maintainedby the microbial ecology Group. Please help to make probeBase http://www.microbial-ecology.de/probebase/

Search Submit Links Ribosomal RNA (rRNA) targeted oligonucleotide probes are widely used for fluorescence in situ, dot blot, and microarray hybridization in culture-independent studies of microbial communities and for the identification of uncultured prokaryotes. probeBase is a comprehensive database containing published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information. View a sample of a probeBase query result probeBase can be searched for target organisms or probe names. The "search target site" function can assist in the development of new rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization (FISH). The "find probe set" tool can be used to rapidly retrieve all published probes targeting your query sequences (e.g. from a rRNA gene clone library) without prior phylogenetic analysis. probeBase is maintained by the Microbial Ecology Group. Please help to make probeBase an up-to-date resource for oligonucleotide probe sequences by submitting missing or new probes!

25. File Not Found- Central Michigan University The Central Michigan University Department of Biology offers the master of science (M.S.) degree with emphasis in aquatic biology, ecology, conservation biology, behavior and behavioral ecology, physiology, microbial ecology, molecular biology, and immunology. The degree is offered with both thesis and nonthesis options. http://www.cmich.edu/GRADBIO.HTML

CMU Home Future Students Current Students Alumni and Friends ... Faculty and Staff File Not Found The file you are looking for either doesn't exist, or has moved Due to recent changes all links to www.cmich.edu have changed. Main Web Site: http://www.cmich.edu/ Site map: http://www.cmich.edu/sitemap.htm Search: http://search.cmich.edu/ Academic Bulletin Information: http://www.cmich.edu/bulletins/ CMU Home Page Links Future Students Current Students News and Media Campus Resources ... Distance Learning Other Common Links CMU Home http://www.cmich.edu/ Academic Bulletins http://www.cmich.edu/bulletins/

26. Improved Protocol For T-RFLP By Capillary Electrophoresis Detailed protocol for terminal restriction fragment length polymorphism (TRFLP), which allows the fingerprinting of a community by analyzing the polymorphism of a certain gene. Article by V Gr¼ntzig, B Stres, HL Ayala del R­o and JM Tiedje, Center for microbial ecology, Michigan State University, USA http://rdp.cme.msu.edu/html/t-rflp_jul02.html

Improved Protocol for T-RFLP by Capillary Electrophoresis July 2002 Center for Microbial Ecology, Michigan State University East Lansing, Michigan, 48824 I. Overview of T-RFLP method for community studies Terminal restriction fragment length polymorphism (T-RFLP) allows the fingerprinting of a community by analyzing the polymorphism of a certain gene. It is a high-throughput, reproducible method that allows the semi-quantitative analysis of the diversity of a particular gene in a community. The figure below illustrates the procedure and the rationale of the method. The DNA is harvested from the analyzed sample (1). The gene of interest is amplified using the polymerase chain reaction (PCR) with a fluorescently labeled primer (2). This yields a mixture of amplicons of the same or similar sizes with a fluorescent label at one end. After purification, the amplicon mixture is digested with a restriction enzyme, which generates fragments of different sizes (A-F) (3). These are separated through gel or capillary electrophoresis (4). A laser reader detects the labeled fragments and generates a profile based on fragment lengths (5). Two methods have been widely used for separation of the fragments obtained after enzymatic restriction of labeled PCR products: gel electrophoresis in polyacrylamide gels and capillary electrophoresis. The former has until recently been more widespread and most of the available protocols for T-RFLP have used this method. However, capillary electrophoresis has been gaining popularity, but the standard procedures for the capillary equipment are not suitable for T-RFLP. Therefore we present a protocol for improved T-RFLP by capillary electrophoresis. The key new steps are identified below as [NEW].

27. Microbial Ecology, Lund University Welcome to. microbial ecology. Dept. of Ecology, Lund University,Sweden. Head of the Section Anders Tunlid Office Anette Persson http://www.biol.lu.se/ekomibi/

Microbial Ecology Home Research Publications Staff Department history ... Links In Swedish Dept. of Ecology Library of Ecology Ask an Ecologist (in swedish) Biology in Lund - ... Other Swedish Univ. Welcome to Microbial Ecology Dept. of Ecology, Lund University, Sweden Head of the Section: Anders Tunlid Office: Anette Persson Phone: +46 46 222 37 63 Fax:+46 46 222 41 58. E-mail address: mbioekol@mbioekol.lu.se Visitor's address: Ekologihuset, Sölvegatan 37, Lund. Mailing address: Department of Microbial Ecology, Ecology Building, Lund University, S-223 62 Lund, Sweden Last updated: document.write(document.lastModified); by Lars Ola Nilsson E-mail E-mail

28. GML Frames The marine laboratory of the College of Charleston and the University of Charleston, housing academic programs in marine biology. The lab supports teaching and research in evolutionary biology, marine biogeography, cellular and molecular biology, benthic ecology, immunology, microbial ecology, phytoplankton ecology, environmental physiology, fish systematics, and invertebrate zoology and other marine sciences. http://www.cofc.edu/~grice/

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29. Microbial Ecology microbial ecology. Genomic Technologies for Microbial Community Analysis.DNA microarray technology has been used primarily to monitor http://www.esd.ornl.gov/facilities/genomics/microbial_ecology.html

Environmental Sciences Division Genomics Laboratory Microbial Ecology Genomic Technologies for Microbial Community Analysis DNA microarray technology has been used primarily to monitor gene expression and regulation on a genome-wide scale. By contrast, the use of microarray hybridization for microbial community detection and analysis has not been previously explored in a rigorous manner. A major focus of the ESD Genomics Laboratory concerns the application of microarray-based genomic technology for the analysis of the composition, function, and dynamics of microbial communities in natural environments. In the laboratory, we have developed three kinds of glass-based microarrays for addressing specific research questions in microbial ecology (below). Functional Gene Arrays (FGAs) To determine the potential of DNA array technology for assessing functional gene diversity and distribution within the context of complex environmental samples, a first-generation functional gene array was constructed with genes involved in nitrogen cycling: nitrite reductase ( nirS and nirK ) genes, ammonia monooxygenase (

30. Soil Ecology And Restoration Group Primary focus is on soils and belowground processes in arid and semiarid ecosystems with emphasis on microbial ecology and plant-microorganism relationships (San Diego State University, University of California Riverside, USA). http://www.serg.sdsu.edu/SERG/

Welcome to the Soil Ecology and Restoration Group (SERG) Web Page last update February 18, 2003 Boletus amygdalimus Arbuscular mycorrhiza Restoration in the Mojave You are Visitor Number Since August 21, 1995 Soil Ecology and Restoration Group Program Managers: David Bainbridge and Tom Zink Senior Research Scientist Dr. Michael Allen Center for Conservation Biology University of California Riverside, CA 92521 Telephone: (619) 594-2883 Fax: (619) 594-3483 Direct E-mail to: Jeff Cooper (For for technical questions about the webpage.) Direct E-mail to: Tom Zink (For questions/comments regarding SERG) Biology Department College of Sciences San Diego State University San Diego, CA 92182 SEARCH THE SERG WEB PAGE About the Soil Ecology and Restoration Group (November 8, 2000) Announcements / Job Opportunities (January 15, 2003) Personnel (January 29, 2003) Publications (November 13, 2001) Current Research (February 18, 2003) Plant and Fungi species lists (April 5, 2001) General restoration techniques and equipment and suppliers (May 13, 2001)

31. Microbial Ecology Group Translate this page http://www.weihenstephan.de/micbio/ecolo.htm

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32. Bioremediation Discussion Group An extensive collection of resources (and links to other Internet resources) about microbial ecology and biogeochemistry, as well as applications to biological remediation. http://www.bioremediationgroup.org/

Welcome to the Home Page Welcome to the home page of the BioGroup, a moderated ListServer: Hosted/Managed By:      Schaffner Applied BioGeoSciences, LLC Founded By: A technical forum for discussing enhanced bioremediation science/engineering and monitored natural attenuation.

33. Institute Of Microbiology And Microbial Ecology Group Translate this page http://www.weihenstephan.de/micbio/

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34. Microbial Ecology Resources: Environmental Design Making microbial ecology Resources' software designed for students. Allows students to create ecosystems to gain understandings of ecosystem functionality and productivity. http://commtechlab.msu.edu/sites/dlc-me/resources/rs_5.html

Microbial Ecology Resources: Software Microbial Ecology Resources: Software Title: Environmental Design Making (EDM) Author: Odum, Elisabeth C.; H.T. Odum; and Nils S. Peterson Media Type: Software Description: This is a part of the BioQuest Library on CD-ROM. "With EDM, students use 'connect-the-components' visual programming tools to create and study model ecosystems. Students build models of increasing complexity, which can include social and economic forces, and study parameter variations to gain understandings of ecosystem functionality and productivity." ~ by the authors E-mail: asdg@umdd.umd.edu Audience: Students Date Published: Publisher: The BioQUEST Curriculum Consortium Address: The ePress Project Academic Software Development Group Computer Science Center , Building 224 University of Maryland College Park , MD 20742 Phone: Fax: Cost: Computer System Requirements: Apple Macintosh with 2.5 Mbytes RAM (in System 6.0.5) or 4 Mbytes RAM (with system 7). CD-ROM drive. How to Contact Us Communication Technology Laboratory Center for Microbial Ecology

35. Microbial Ecology & Environmental Engineering Department The microbial ecology and Environmental Engineering Department (ME EED) scientistsand engineers provide expertise to ESD in microbial ecology and http://www-esd.lbl.gov/ECO/

Calendar Collaborations Publications Current Projects ... Staff Scientific Focus Areas The Microbial Ecology and Environmental Engineering Department maintains the highest quality and highest visibility for its research and development in four areas: HydroEcological Engineering Advanced Decision Support (HEADS) Molecular Microbial Ecology Real-time Direct Environmental Assessment Biological Treatment, Bioremediation, and Natural Attenuation For additional information about bioremediation, check out the PBS program " Intimate Strangers: Unseen Life on Earth ." Program Areas: Environmental Remediation Technology (ERT) Related Research Groups: Center for Environmental Biotechnology (CEB) HydroEcological Engineering Advanced Decision Support (HEADS) ... Virtual Institute for Microbial Stress and Survival (VIMSS)

36. Welcome To The Rrndb - The Ribosomal RNA Operon Copy Number Database Database of over 300 operons, including 77 from whole genome sequence projects, enabling search through the phylogenetic distribution from the Center for microbial ecology at MSU, Lansing, MI. http://rrndb.cme.msu.edu/

Wed Apr 09 18:25:52 EDT 2003 About Credits FAQs Feedback ... Michigan State University

37. Microbial Ecology & Environmental Engineering Department must address at the most contaminated sites has greatly increased the urgency forbasic and applied research related to microbial ecology and biogeochemistry. http://www-esd.lbl.gov/ECO/biotreat.html

Home Collaborations Publications Current Projects ... Staff Biological Treatment, Bioremediation, and Natural Attenuation in situ and ex situ have also enjoyed strong scientific growth, in part due to the increased use of natural attenuation, since most natural attenuation is due to biodegradation. Bioremediation and Natural Attenuation are also seen as a solution for emerging contaminant problems, e.g. MTBE, endocrine disrupters, landfill stabilization, mixed waste biotreatment, and biological carbon sequestration. , NH Basic Research Areas Co-Metabolism. Biotreatability. Biotransformation Kinetics. Modeling. Field Applications Co-Metabolic Techniques. Biogeochemical Assessment Techniques.

38. Current Issues In Intestinal Microbiology Publishes review papers in all areas of intestinal microbiology pertaining to human and other animal systems, including microbial ecology, pathogenic organisms, probiotics and prebiotics. http://www.ciim.net/

Home Online Journal TOCs Author Instructions ... Contact us Current Issues in Intestinal Microbiology ISSN 1466-531X (print) ISSN 1466-5328 (on-line) CIIM is abstracted in Index Medicus, Medline Pubmed , CAB Abstracts, CAB Health, EMBASE (Excerpta Medica), and BIOBASE (Current Awareness in Biological Sciences). Table of Contents and abstracts available free online. Aims and Scope Current Issues in Intestinal Microbiology (CIIM) is a peer-reviewed, international journal. CIIM publishes high-quality papers, in English, in all areas of intestinal microbiology pertaining to human and other animal systems, including: microbial ecology, pathogenic organisms, probiotics and prebiotics. The journal is published in print and electronic forms. Two issues per year. Instructions for Authors CIIM is currently seeking the submission of reviews, minireviews and original research papers in all areas of intestinal microbiology. Please use the Online Submission system or alternatively send your manuscripts to our editorial office at CIIM, 32 Hewitts Lane, Wymondham, NR18 0JA, UK. Your manuscript is assured a warm welcome and prompt attention. Full Instructions for Authors are available. For details please

39. Astrobiology Web Microbes and other life forms in extreme environments. (Although the title of this site implies that it is about space, this is an excellent resource about microbial ecology in unusual environmental conditions here on Earth.) http://www.reston.com/astro/extreme.html

40. LTER Microbial Ecology Describes the LongTerm Ecological Research (LTER) programs concerned with microorganisms at a wide Category Science Biology Ecology microbial ecology......LTER microbial ecology. http://lternet.edu/technology/microbial_ecology/

LTER Microbial Ecology Microbial Ecology Reports LTER Microbial Ecology Vision Statement Home ILTER ... BACK This material is based upon work supported by the National Science Foundation under Cooperative Agreement #DEB-9634135 . Any opinions, findings, conclusions, or recommendations expressed in the material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Please contact webtask@lternet.edu with questions, comments, or for technical assistance regarding this web site.

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